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Thiols Analysis Service—Targeted LC–MS/MS Profiling & Quantification

Thiols are critical redox-active metabolites—but highly unstable during handling. At Creative Proteomics, we offer stability-first thiols analysis services that overcome oxidation, co-elution, and derivatization bias to deliver reproducible, quantitative insights across biofluids, cells, tissues, and fermentation systems.

We help researchers and process teams:

  • Preserve free thiols and disulfides with matrix-matched stabilization
  • Resolve isomeric thiols via HILIC or mixed-mode LC–MS/MS
  • Profile CoA thioesters, volatile sulfur compounds, and reactive adducts
  • Quantify redox pairs, GSH conjugates, and low-abundance thiols with confidence

Why it matters: Redox imbalance, sample degradation, or uncontrolled reactivity can undermine both discovery and process consistency. Our thiol workflows integrate targeted LC–MS/MS, PRM confirmation, and validated quench protocols to ensure high-fidelity data—from sample to final report.

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What Are Thiols—and Why Analyze Them

Thiols are small sulfur-containing molecules featuring a reactive sulfhydryl (–SH) group. As key participants in redox reactions, enzyme catalysis, and cellular detoxification, they serve as sensitive indicators of oxidative balance, metabolic flux, and thiol–disulfide exchange dynamics across diverse biological and chemical systems.

Precise thiol analysis is essential for understanding redox pathways, assessing sample integrity, and identifying unwanted chemical reactivity in biological, industrial, or formulation matrices. Yet due to their high reactivity and poor stability, thiols are among the most technically challenging metabolites to measure—requiring specialized derivatization and stabilization protocols to ensure data accuracy.

Problems We Help You Solve

Thiols are chemically unstable and analytically difficult to quantify. Common issues include:

  • Oxidation during handling
    Free thiols readily oxidize to disulfides, distorting true concentrations unless rapidly stabilized.
  • Poor retention and co-elution
    Many thiols are small and polar, making them hard to retain on standard LC columns and prone to matrix interference.
  • Derivatization bias
    Incomplete or inconsistent labeling can compromise both sensitivity and accuracy.

Creative Proteomics overcomes these barriers using tailored stabilization, isomer-resolved chromatography, and matrix-matched quantification. The result is reliable, reproducible data—even from complex or reactive samples.

Thiols Analysis Service Options and Custom Modules

  • Targeted LC–MS/MS Quantification
    Quantitative MRM/PRM for predefined thiols panels across biofluids, cells, tissues, and process matrices; fit-for-purpose calibration and QC.
  • Redox Speciation (Reduced vs Disulfide Forms)
    Stabilized workflows to measure free, protein-bound, and oxidized states; supports redox ratio readouts and trend tracking.
  • High-Resolution Confirmation (PRM/HRAM)
    Orthogonal confirmation of key targets or suspected adducts; documentation suitable for method transfer.
  • Volatile Thiols (GC–MS)
    Headspace or extract-based methods for aroma-/process-related sulfur compounds in food, beverage, and fermentation contexts.
  • Custom Method Development or Bridging
    Method transfer, matrix-effect studies, spike-recovery optimization, and SOP alignment for regulated-like environments.

Detectable Thiols and Sulfur Compounds: Full Panel

Category Representative analytes Notes
Core endogenous low-MW thiols Cysteine (free/protein-bound), Homocysteine, Cysteinylglycine, Cysteamine, γ-Glutamylcysteine, 2-Mercaptoethanol Speciation of free vs. protein-bound available
Disulfides & redox pairs Cystine, Homocystine, Mixed disulfides (Cys–GSH, GSH–protein), GSSG Report with redox-pair context if needed
RSNO & persulfides (reactive sulfur species) S-Nitrosoglutathione (GSNO*), S-Nitrosocysteine (Cys-NO*), Glutathione persulfide (GSSH*), Cysteine persulfide (Cys-SSH*) *Stabilized capture/derivatization required
Sulfenic/sulfinic/sulfonic acids (oxidized thiol states) Cysteine-SOH*, Cysteine-SO2H, Cysteic acid (Cys-SO3H) *Trapping reagents recommended for SOH
Glutathione pathway & conjugates GSH, GSSG, Ophthalmate, Selected GSH-conjugates (custom list) Targeted MRM/PRM with reference standards
CoA thiols & acyl-thioesters CoA-SH, Acetyl-CoA, Succinyl-CoA, Malonyl-CoA, Propionyl-CoA, Butyryl-CoA, Palmitoyl-CoA, Crotonyl-CoA Panel extendable to additional acyl-CoAs
Sulfur metabolites (inorganic/related) H2S*, Thiosulfate, Sulfite/Sulfate†, Taurine, Cysteinesulfinic acid *Captured/derivatized; †reported as related anions
Volatile thiols (aroma/process) 3-Mercaptohexan-1-ol (3-MH), 3-Mercaptohexyl acetate (3-MHA), 2-Furfurylthiol, Methanethiol, Ethanethiol, Benzenemethanethiol, 3-Mercapto-3-methyl-1-butanol GC–MS headspace or extract workflows
Exogenous/therapeutic thiols & reagents N-Acetylcysteine (NAC), Penicillamine, DTT†, β-Mercaptoethanol†, MESNA (2-mercaptoethanesulfonate), Thiocholine †Typically tracked as process controls
Thioethers & special sulfur antioxidants Ergothioneine (ERG), Lanthionine Often quantified alongside thiols for redox context
Cyclized/derived forms Homocysteine thiolactone (HCTL), Cystathionine Include when homocysteine metabolism is in scope

Notes: Final panels are tailored to matrix and purpose. If a target is not listed, provide a standard or structure and we will scope feasibility.

Why Choose Our Thiols Analysis Service?

  • Stability-first sampling

Predefined quench/derivatization plans reduce oxidation artifacts and re-equilibration errors.

  • Quantitative confidence

Method acceptance targets: R2 ≥ 0.995 and ≤ 15% CV intra-batch, documented per batch.

  • Matrix-Matched Recovery (85–115%):

Calibration is performed in matched matrices (serum, broth, buffers) to minimize suppression; spike recovery data is reported per batch.

  • Broad dynamic range

Calibration routinely spans ≥ 4 orders of magnitude, with matrix-matched verification.

  • Trace detection when matrices permit

Triple-quadrupole MRM supports sub-nanomolar detection; achieved LOD/LOQ reported by analyte.

  • Isomer-resolved chromatography

HILIC or mixed-mode methods minimize co-elution and ion suppression for polar thiols.

  • Instrument-level traceability

Delivered packages include raw data, method files, transitions, and calibration back-calculations.

  • Carryover control

Sequence design and hardware rinses target < 0.1% carryover; blanks confirm performance.

  • Robust confirmation

PRM/HRAM verification flags interferences and secures identity in complex matrices.

How We Analyze Thiols: Methods, Instruments, and Parameters

At Creative Proteomics, thiols are quantified using targeted LC–MS/MS, PRM-based high-resolution confirmation, or HPLC-FLD, depending on analyte class, matrix type, and project goals. All methods are derivatization-compatible and stability-aware.

LC–MS/MS (Targeted Quantification)

Platforms:

    • Triple Quad: Agilent 6495C
    • UHPLC Systems: Waters ACQUITY

Method Highlights:

  • Scheduled MRM for throughput and matrix-specific transitions
  • HILIC or mixed-mode chromatography for polar thiols and redox pairs
  • Derivatization reagents include NEM, IAA, mBBr

Best suited for: Absolute quantification in plasma, tissues, cells, fermentation samples

HPLC–FLD (Fluorescence Detection)

Platform: Agilent 1260 Infinity II FLD

Reagents: Monobromobimane (mBBr) or Thioglo tags

Application: Routine free thiol quantification or GSH:GSSG ratio tracking

Best suited for: High-throughput sample screening without isomer resolution

High-Resolution PRM (Qualitative & Orthogonal Confirmation)

Platform: Orbitrap Exploris 480

Use Case: Identity confirmation, interference resolution, conjugate screening

Approach: PRM with full MS2 spectra, optional library matching or neutral loss scanning

Best suited for: Adduct verification, low-abundance confirmation, unknown annotation

GC–MS (Volatile Sulfur Compounds)

Platform: Thermo ISQ 7000

Approach: Headspace-SPME, derivatization or direct injection

Analytes: Methanethiol, ethanethiol, 3-MH, 2-furfurylthiol

Best suited for: Food aroma studies, process volatiles, fermentation diagnostics

Agilent 6495C Triple Quadrupole

Agilent 6495C Triple Quadrupole (Figure from Agilent)

Agilent 1260 Infinity II HPLC

Agilent 1260 Infinity II HPLC (Fig from Agilent)

Thermo Orbitrap Exploris 480

Orbitrap Exploris 480 (Figure from Thermo)

Thermo ISQ 7000

Thermo ISQ 7000 (Figure from Thermo)

Thiols Analysis Workflow: Step by Step

1

Scope & Panel Setup

Define matrices, target thiols, expected ranges, and acceptance criteria aligned to goals.

2

Stabilization Strategy

Select quench and derivatization chemistry (e.g., NEM, IAA, mBBr) matched to matrix risks.

3

Sample Preparation

Deproteinize under cold conditions, perform reduction/alkylation if required, and apply SPE or filtration.

4

Chromatography & Acquisition

Run HILIC or mixed-mode LC for polar thiols; acquire targeted MRM or PRM with scheduled windows.

5

Quality Control & Verification

Use blanks, surrogates, matrix spikes, pooled QCs, and orthogonal HRAM confirmation where necessary.

6

Data Analysis & Review

Quantify against matrix-matched calibration, assess recovery and precision, and investigate interferences.

Thiols analysis workflow showing scope, stabilization, prep, LC–MS acquisition, QC, data review, and reporting

Sample Requirements for Thiols Profiling

Sample Type Minimum Volume Recommended Concentration Storage Conditions Preparation Notes
Biological Fluids 100 µL 1–5 mg/mL Store at -80°C for long-term storage Ensure samples are collected in clean, sterile containers to avoid contamination. Use EDTA or other anticoagulants when necessary.
Tissue Samples 50 mg 10–100 mg/g Store at -80°C or snap freeze with liquid nitrogen for long-term storage Samples should be processed immediately after collection to prevent oxidation. Homogenize tissue samples in buffer containing protease inhibitors.
Cell Culture Media 200 µL 0.1–10 mg/mL Refrigerate at 4°C for short-term or store at -80°C for long-term Collect media at the appropriate time point to capture relevant thiol changes. Filter to remove cell debris before analysis.
Protein Solutions 10 µL 1–10 mg/mL Store at -80°C for long-term storage Ensure protein samples are stored in small aliquots to prevent repeated freeze-thaw cycles, which can affect thiol stability.
Plasma/Serum 100 µL 1–5 mg/mL Store at -80°C or freeze immediately Plasma or serum should be separated from whole blood within 1–2 hours of collection to prevent oxidation and protein degradation.
Plant Samples 100 mg 10–100 mg/g Store at -80°C for long-term storage Homogenize plant material with a suitable extraction buffer immediately after collection to prevent oxidation of thiol groups.

Notes for All Sample Types:

  • Avoid exposure to light during sample collection and processing, as thiols are sensitive to UV radiation.
  • Use antioxidants in buffers or solutions to minimize thiol oxidation during sample preparation.
  • Minimize sample handling to avoid degradation or modification of thiol groups.

What You Receive: Deliverables from Our Thiols Analysis

  • Analytical Report: A detailed summary of thiol concentrations, oxidation states, and disulfide bond analysis.
  • Raw Data Files: Raw data in CSV, Excel, or instrument-specific formats for further analysis.
  • Statistical Analysis: Interpretation of the data, including statistical significance and comparisons.
  • Data Visualizations: Graphs and charts for easy interpretation of results.
  • Methodology Document: A description of the methods and protocols used in the analysis.
LC-MS chromatogram showing high-resolution peaks of different thiol compounds, highlighting precise retention times and separation capabilities.

LC-MS Chromatogram of Thiol Compounds

SDS-PAGE gel displaying reduced and oxidized protein bands, marked in blue and orange, respectively, illustrating disulfide bond formation.

SDS-PAGE Disulfide Bond Formation

Fluorescence spectroscopy calibration curve showing the linear relationship between thiol concentration and fluorescence intensity for accurate quantification

Fluorescence Spectroscopy Calibration Curve

HPLC chromatogram depicting the separation of reduced and oxidized thiols, with distinct peaks for each state marked by red and green dashed lines.

HPLC Chromatogram for Reduced vs. Oxidized Thiols

Applications of Thiols Analysis in Research and Industry

Biotechnology

Analyzing thiol-dependent protein folding and stability in biomanufacturing processes.

Cellular Biology

Assessing oxidative stress and thiol redox status in cell cultures and tissues.

Pharmaceutical Research

Studying thiol-based drug targets and mechanisms in cellular pathways.

Environmental Science

Monitoring the impact of pollutants on thiol-containing biomolecules in ecosystems.

Agricultural Biotechnology

Investigating the role of thiols in plant stress responses and genetic modifications.

Materials Science

Developing thiol-modified biomaterials for medical and industrial applications.

How do you stabilize thiols during sampling and prep to avoid artefactual oxidation?

Use immediate quenching/alkylation (e.g., N-ethylmaleimide or iodoacetamide) at low temperature, minimize air exposure, and proceed with rapid deproteinization; this prevents conversion of reduced GSH and other –SH species to disulfides that otherwise inflate “oxidized” readouts.

Which derivatization reagents are commonly used for thiol detection, and when?

Monobromobimane is widely used for fluorescence/HPLC or LC–MS workflows because it becomes highly fluorescent after reacting with thiols, while N-ethylmaleimide and iodoacetamide provide fast, irreversible alkylation compatible with LC–MS/MS quantification and redox-speciation designs.

Can LC–MS/MS distinguish free vs. protein-bound or oxidized thiols?

Yes; differential alkylation strategies coupled to targeted LC–MS/MS or PRM allow separate tracking of reduced, mixed-disulfide, and other oxidized states, enabling thiol/disulfide speciation beyond total pools.

When should I choose HILIC or mixed-mode LC instead of standard reversed-phase?

For small, polar thiols that elute early or co-elute on C18, HILIC or mixed-mode chemistries provide stronger retention and improved selectivity, reducing matrix interference in metabolomics-style assays.

Why do many GSH/GSSG assays report unexpectedly high GSSG, and how is this avoided?

Artificial oxidation of GSH during pre-analytical handling can inflate apparent GSSG; stabilization at collection and matrix-appropriate workflows are essential to avoid the well-documented “micromolar GSSG” artefact.

How are S-nitrosothiols (RSNOs) handled given their lability?

RSNOs require specialized stabilization and detection (e.g., photolysis/chemiluminescence or LC approaches with tailored derivatization), because they decompose or transnitrosate under common prep conditions; method selection hinges on sample matrix and target RSNO.

Do you support analysis of volatile thiols (e.g., 3-MH, 3-MHA) from fermentation or flavor matrices?

Yes; volatile thiols are typically measured by headspace SPME followed by GC–MS/MS, often after thiol-specific derivatization (e.g., PFB derivatives) to enhance sensitivity for ultra-trace levels in complex matrices.

What is matrix-matched calibration and when is it needed for thiols?

Matrix-matched calibration uses the same matrix type (post-extraction or surrogate) to build calibration curves, compensating for ion suppression or adduct formation—especially important for polar thiols where retention and response are matrix dependent.

Can LC–MS/MS confirm low-abundance thiol adducts or conjugates (e.g., GSH adducts)?

High-resolution PRM provides full MS2 spectra and accurate mass to orthogonally confirm targeted adducts, resolving isobaric interferences that may persist in MRM-only data.

How should samples containing CoA thioesters be treated to prevent hydrolysis?

Keep samples cold and acidified as appropriate, minimize freeze–thaw, and proceed rapidly to extraction and LC–MS to preserve labile acyl-CoAs and avoid thioester exchange that can bias quantification.

Are there special considerations for protein free-cysteine measurement in biotherapeutics?

Yes; free cysteines can affect protein stability and efficacy, so workflows often pair selective alkylation with MS readouts to locate and quantify free cysteines under native-compatible conditions.

How do you decide between FLD and MS detection for thiols?

HPLC–FLD after mBBr derivatization is efficient for screening or ratio tracking, whereas LC–MS/MS or PRM is preferred when selectivity, isomer resolution, and structural confirmation are required in complex matrices.

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